FastQCFastQC Report
Thu 10 Nov 2022
G164-M5-i7-03-i5-05_CGCTCATT-AGGCGAAG_H75HLDSXX_L004_001.R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG164-M5-i7-03-i5-05_CGCTCATT-AGGCGAAG_H75HLDSXX_L004_001.R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24922836
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT447160.1794177837546257No Hit
CTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATT294150.11802428904960896No Hit
CTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTCAC259110.10396489388286309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)