FastQCFastQC Report
Mon 7 Feb 2022
662_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename662_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45110188
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTACCAAAAT1050010.23276560053352027No Hit
AAGGAGTCTAACGCGTGCGCGAGTCAGGGGCTCGTCCGAAAGCCGCCGTG681460.1510656528409946No Hit
AAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTACCAAAATG616010.13655673525457263No Hit
GCCACGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCC597570.1324689668772828No Hit
GAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTACCAAAATGAA566240.1255237508653256No Hit
ACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTACCAAAA549320.12177293519592514No Hit
ATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTACCA475090.10531767236261573No Hit
TCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTACCAA466670.10345113170443891No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)