FastQCFastQC Report
Mon 7 Feb 2022
594_R2_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename594_R2_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39294919
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGAGTCTAACGCGTGCGCGAGTCAGGGGCTCGTCCGAAAGCCGCCGTG1337670.3404180576119778No Hit
CAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTACCAAAAT612490.15587002482432907No Hit
GATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAA398680.10145840992826578No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)