How to start the script:

1. Put your FASTQ files to FASTQ directory
2. Start the script using "qsub run.qsub" command
3. Wait around 10 minutes and visit waxmanlabvm.bu.edu/NanoporeResults/ directory


How to upload tracks:

1. Open UCSC browser and go to our lab session
2. Inside the search input type "DEFAULT_RNASEQ"
3. Open this session and go to "My data" -> "Custom tracks"
4. Go to http://waxmanlabvm.bu.edu/NanoporeResults/<USERNAME>/<FASTQ>/tracklines.txt in browser and copy content into "Custom tracks" window
5. Click "Submit"