# /projectnb/wax-es/routines/BIN/stringtie -L MS329_434.sorted.filtered.spliced.bam -o MS329_434.NOREF.spliced.gtf
# StringTie version 3.0.1
chr11	StringTie	transcript	63175437	63175776	1000	.	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; longcov "4.964706"; cov "4.964706"; FPKM "7253.961914"; TPM "27047.121094";
chr11	StringTie	exon	63175437	63175776	1000	.	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "4.964706";
chr19	StringTie	transcript	23134530	23141545	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; longcov "25.000000"; cov "32.420017"; FPKM "47369.085938"; TPM "176620.359375";
chr19	StringTie	exon	23134530	23134586	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "37.343857";
chr19	StringTie	exon	23134721	23141545	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "2"; cov "32.378895";
chr19	StringTie	transcript	23134530	23141545	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; longcov "25.000000"; cov "32.387859"; FPKM "47322.097656"; TPM "176445.171875";
chr19	StringTie	exon	23134530	23134586	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "1"; cov "28.883171";
chr19	StringTie	exon	23134721	23134854	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "2"; cov "33.199745";
chr19	StringTie	exon	23141259	23141545	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "3"; cov "32.704849";
chr19	StringTie	transcript	23134530	23141545	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.3"; longcov "6.000000"; cov "6.281514"; FPKM "9177.958008"; TPM "34220.933594";
chr19	StringTie	exon	23134530	23134586	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "1"; cov "7.208307";
chr19	StringTie	exon	23134721	23139461	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "2"; cov "6.025940";
chr19	StringTie	exon	23139537	23141545	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "3"; cov "6.858346";
chr19	StringTie	transcript	23134535	23141545	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; longcov "30.000000"; cov "51.636810"; FPKM "75446.859375"; TPM "281311.125000";
chr19	StringTie	exon	23134535	23134590	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "46.592281";
chr19	StringTie	exon	23134722	23134855	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "47.397121";
chr19	StringTie	exon	23141262	23141545	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "3"; cov "54.631927";
chr19	StringTie	transcript	23134535	23141545	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.2"; longcov "38.000000"; cov "23.871403"; FPKM "34878.652344"; TPM "130048.523438";
chr19	StringTie	exon	23134535	23134590	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.2"; exon_number "1"; cov "129.429718";
chr19	StringTie	exon	23134722	23141545	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.2"; exon_number "2"; cov "23.005156";
chr2	StringTie	transcript	119280270	119280926	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; longcov "2.000000"; cov "1.745098"; FPKM "2549.773193"; TPM "9507.083984";
chr2	StringTie	exon	119280270	119280618	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "1.664756";
chr2	StringTie	exon	119280817	119280926	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "2"; cov "2.000000";