# /projectnb/wax-es/routines/BIN/stringtie MS329_432.sorted.filtered.unspliced.bam -o MS329_432.NOREF.unspliced.gtf
# StringTie version 3.0.1
chr11	StringTie	transcript	46426443	46427242	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.558750"; FPKM "15363.302734"; TPM "24667.753906";
chr11	StringTie	exon	46426443	46427242	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.558750";
chr11	StringTie	transcript	67616132	67616545	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "4.990338"; FPKM "13792.322266"; TPM "22145.343750";
chr11	StringTie	exon	67616132	67616545	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "4.990338";
chr12	StringTie	transcript	76577533	76577850	1000	-	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "6.801887"; FPKM "18799.091797"; TPM "30184.353516";
chr12	StringTie	exon	76577533	76577850	1000	-	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "6.801887";
chr13	StringTie	transcript	25108981	25109431	1000	+	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "5.631929"; FPKM "15565.554688"; TPM "24992.496094";
chr13	StringTie	exon	25108981	25109431	1000	+	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "5.631929";
chr14	StringTie	transcript	27381732	27382635	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "6.678097"; FPKM "18456.958984"; TPM "29635.017578";
chr14	StringTie	exon	27381732	27382635	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "6.678097";
chr19	StringTie	transcript	23136933	23141546	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "37.529907"; FPKM "103725.351562"; TPM "166544.375000";
chr19	StringTie	exon	23136933	23141546	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "37.529907";
chr19	StringTie	transcript	45661886	45662227	1000	-	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "29.447369"; FPKM "81386.789062"; TPM "130676.937500";
chr19	StringTie	exon	45661886	45662227	1000	-	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "29.447369";
chr1	StringTie	transcript	186434605	186434857	1000	+	.	gene_id "STRG.8"; transcript_id "STRG.8.1"; cov "10.790514"; FPKM "29822.876953"; TPM "47884.460938";
chr1	StringTie	exon	186434605	186434857	1000	+	.	gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "1"; cov "10.790514";
chr2	StringTie	transcript	181598460	181598807	1000	-	.	gene_id "STRG.9"; transcript_id "STRG.9.1"; cov "5.885057"; FPKM "16265.151367"; TPM "26115.787109";
chr2	StringTie	exon	181598460	181598807	1000	-	.	gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "1"; cov "5.885057";
chr3	StringTie	transcript	111791956	111792277	1000	-	.	gene_id "STRG.10"; transcript_id "STRG.10.1"; cov "7.375776"; FPKM "20385.207031"; TPM "32731.068359";
chr3	StringTie	exon	111791956	111792277	1000	-	.	gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "1"; cov "7.375776";
chr3	StringTie	transcript	115174052	115174435	1000	+	.	gene_id "STRG.11"; transcript_id "STRG.11.1"; cov "5.000000"; FPKM "13819.026367"; TPM "22188.220703";
chr3	StringTie	exon	115174052	115174435	1000	+	.	gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "1"; cov "5.000000";
chr6	StringTie	transcript	71814085	71814518	1000	-	.	gene_id "STRG.12"; transcript_id "STRG.12.1"; cov "10.317972"; FPKM "28516.865234"; TPM "45787.488281";
chr6	StringTie	exon	71814085	71814518	1000	-	.	gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "1"; cov "10.317972";
chr6	StringTie	transcript	100090463	100090675	1000	+	.	gene_id "STRG.13"; transcript_id "STRG.13.1"; cov "5.000000"; FPKM "13819.026367"; TPM "22188.220703";
chr6	StringTie	exon	100090463	100090675	1000	+	.	gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "1"; cov "5.000000";
chr7	StringTie	transcript	30092012	30092299	1000	+	.	gene_id "STRG.14"; transcript_id "STRG.14.1"; cov "24.076389"; FPKM "66542.445312"; TPM "106842.445312";
chr7	StringTie	exon	30092012	30092299	1000	+	.	gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "1"; cov "24.076389";
chr7	StringTie	transcript	119182716	119182981	1000	+	.	gene_id "STRG.15"; transcript_id "STRG.15.1"; cov "21.988720"; FPKM "60772.539062"; TPM "97578.109375";
chr7	StringTie	exon	119182716	119182981	1000	+	.	gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "1"; cov "21.988720";
chr7	StringTie	transcript	126476881	126477498	1000	+	.	gene_id "STRG.16"; transcript_id "STRG.16.1"; cov "4.982201"; FPKM "13769.833984"; TPM "22109.234375";
chr7	StringTie	exon	126476881	126477498	1000	+	.	gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "1"; cov "4.982201";
chr7	StringTie	transcript	140301495	140301893	1000	-	.	gene_id "STRG.17"; transcript_id "STRG.17.1"; cov "4.809524"; FPKM "13292.587891"; TPM "21342.955078";
chr7	StringTie	exon	140301495	140301893	1000	-	.	gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "1"; cov "4.809524";
chr7	StringTie	transcript	142164339	142164629	1000	-	.	gene_id "STRG.18"; transcript_id "STRG.18.1"; cov "20.948454"; FPKM "57897.445312"; TPM "92961.781250";
chr7	StringTie	exon	142164339	142164629	1000	-	.	gene_id "STRG.18"; transcript_id "STRG.18.1"; exon_number "1"; cov "20.948454";
chrX	StringTie	transcript	112045820	112046148	1000	+	.	gene_id "STRG.19"; transcript_id "STRG.19.1"; cov "7.531915"; FPKM "20816.746094"; TPM "33423.957031";
chrX	StringTie	exon	112045820	112046148	1000	+	.	gene_id "STRG.19"; transcript_id "STRG.19.1"; exon_number "1"; cov "7.531915";