# /projectnb/wax-es/routines/BIN/stringtie JXL6_TF3.sorted.filtered.unspliced.bam -o JXL6_TF3.NOREF.unspliced.gtf
# StringTie version 3.0.1
chr10	StringTie	transcript	28464488	28464770	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.000000"; FPKM "9800.500977"; TPM "13173.329102";
chr10	StringTie	exon	28464488	28464770	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.000000";
chr12	StringTie	transcript	95883954	95884284	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "7.939577"; FPKM "15562.367188"; TPM "20918.132812";
chr12	StringTie	exon	95883954	95884284	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "7.939577";
chr13	StringTie	transcript	74794148	74794895	1000	-	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "9.981283"; FPKM "19564.316406"; TPM "26297.345703";
chr13	StringTie	exon	74794148	74794895	1000	-	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "9.981283";
chr14	StringTie	transcript	31713180	31714976	1000	+	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "9.360601"; FPKM "18347.716797"; TPM "24662.054688";
chr14	StringTie	exon	31713180	31714976	1000	+	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "9.360601";
chr14	StringTie	transcript	45820259	45820833	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "6.986087"; FPKM "13693.430664"; TPM "18406.003906";
chr14	StringTie	exon	45820259	45820833	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "6.986087";
chr17	StringTie	transcript	30824983	30825455	1000	+	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "6.000000"; FPKM "11760.601562"; TPM "15807.995117";
chr17	StringTie	exon	30824983	30825455	1000	+	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "6.000000";
chr17	StringTie	transcript	34730191	34731348	1000	-	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "105.555267"; FPKM "206898.890625"; TPM "278102.843750";
chr17	StringTie	exon	34730191	34731348	1000	-	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "105.555267";
chr1	StringTie	transcript	16344152	16344383	1000	+	.	gene_id "STRG.8"; transcript_id "STRG.8.1"; cov "7.913793"; FPKM "15511.827148"; TPM "20850.199219";
chr1	StringTie	exon	16344152	16344383	1000	+	.	gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "1"; cov "7.913793";
chr1	StringTie	transcript	188145950	188146428	1000	-	.	gene_id "STRG.9"; transcript_id "STRG.9.1"; cov "5.000000"; FPKM "9800.500977"; TPM "13173.329102";
chr1	StringTie	exon	188145950	188146428	1000	-	.	gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "1"; cov "5.000000";
chr1	StringTie	transcript	192165908	192166232	1000	-	.	gene_id "STRG.10"; transcript_id "STRG.10.1"; cov "4.975385"; FPKM "9752.252930"; TPM "13108.476562";
chr1	StringTie	exon	192165908	192166232	1000	-	.	gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "1"; cov "4.975385";
chr2	StringTie	transcript	4711419	4712236	1000	-	.	gene_id "STRG.11"; transcript_id "STRG.11.1"; cov "4.838631"; FPKM "9484.201172"; TPM "12748.175781";
chr2	StringTie	exon	4711419	4712236	1000	-	.	gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "1"; cov "4.838631";
chr2	StringTie	transcript	48024454	48025474	1000	+	.	gene_id "STRG.12"; transcript_id "STRG.12.1"; cov "5.000000"; FPKM "9800.500977"; TPM "13173.329102";
chr2	StringTie	exon	48024454	48025474	1000	+	.	gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "1"; cov "5.000000";
chr2	StringTie	transcript	174472109	174472448	1000	+	.	gene_id "STRG.13"; transcript_id "STRG.13.1"; cov "7.952941"; FPKM "15588.561523"; TPM "20953.341797";
chr2	StringTie	exon	174472109	174472448	1000	+	.	gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "1"; cov "7.952941";
chr3	StringTie	transcript	10243520	10243817	1000	-	.	gene_id "STRG.14"; transcript_id "STRG.14.1"; cov "8.865772"; FPKM "17377.802734"; TPM "23358.345703";
chr3	StringTie	exon	10243520	10243817	1000	-	.	gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "1"; cov "8.865772";
chr4	StringTie	transcript	113900868	113901233	1000	+	.	gene_id "STRG.15"; transcript_id "STRG.15.1"; cov "7.000000"; FPKM "13720.701172"; TPM "18442.660156";
chr4	StringTie	exon	113900868	113901233	1000	+	.	gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "1"; cov "7.000000";
chr5	StringTie	transcript	118501971	118502506	1000	-	.	gene_id "STRG.16"; transcript_id "STRG.16.1"; cov "4.970149"; FPKM "9741.990234"; TPM "13094.681641";
chr5	StringTie	exon	118501971	118502506	1000	-	.	gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "1"; cov "4.970149";
chr5	StringTie	transcript	134993201	134993527	1000	+	.	gene_id "STRG.17"; transcript_id "STRG.17.1"; cov "5.000000"; FPKM "9800.500977"; TPM "13173.329102";
chr5	StringTie	exon	134993201	134993527	1000	+	.	gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "1"; cov "5.000000";
chr6	StringTie	transcript	35279079	35280296	1000	+	.	gene_id "STRG.18"; transcript_id "STRG.18.1"; cov "51.252052"; FPKM "100459.156250"; TPM "135032.031250";
chr6	StringTie	exon	35279079	35280296	1000	+	.	gene_id "STRG.18"; transcript_id "STRG.18.1"; exon_number "1"; cov "51.252052";
chr6	StringTie	transcript	145115782	145116507	1000	+	.	gene_id "STRG.19"; transcript_id "STRG.19.1"; cov "4.990358"; FPKM "9781.601562"; TPM "13147.925781";
chr6	StringTie	exon	145115782	145116507	1000	+	.	gene_id "STRG.19"; transcript_id "STRG.19.1"; exon_number "1"; cov "4.990358";
chr7	StringTie	transcript	46906072	46906311	1000	+	.	gene_id "STRG.20"; transcript_id "STRG.20.1"; cov "40.966667"; FPKM "80298.773438"; TPM "107933.476562";
chr7	StringTie	exon	46906072	46906311	1000	+	.	gene_id "STRG.20"; transcript_id "STRG.20.1"; exon_number "1"; cov "40.966667";
chr7	StringTie	transcript	73412867	73413423	1000	-	.	gene_id "STRG.21"; transcript_id "STRG.21.1"; cov "10.692998"; FPKM "20959.347656"; TPM "28172.476562";
chr7	StringTie	exon	73412867	73413423	1000	-	.	gene_id "STRG.21"; transcript_id "STRG.21.1"; exon_number "1"; cov "10.692998";
chr7	StringTie	transcript	95443844	95444177	1000	-	.	gene_id "STRG.22"; transcript_id "STRG.22.1"; cov "6.000000"; FPKM "11760.601562"; TPM "15807.995117";
chr7	StringTie	exon	95443844	95444177	1000	-	.	gene_id "STRG.22"; transcript_id "STRG.22.1"; exon_number "1"; cov "6.000000";
chr7	StringTie	transcript	146929251	146929675	1000	+	.	gene_id "STRG.23"; transcript_id "STRG.23.1"; cov "15.720000"; FPKM "30812.775391"; TPM "41416.945312";
chr7	StringTie	exon	146929251	146929675	1000	+	.	gene_id "STRG.23"; transcript_id "STRG.23.1"; exon_number "1"; cov "15.720000";
chr8	StringTie	transcript	42716952	42717336	1000	+	.	gene_id "STRG.24"; transcript_id "STRG.24.1"; cov "8.000000"; FPKM "15680.801758"; TPM "21077.326172";
chr8	StringTie	exon	42716952	42717336	1000	+	.	gene_id "STRG.24"; transcript_id "STRG.24.1"; exon_number "1"; cov "8.000000";
chr8	StringTie	transcript	125176213	125178572	1000	-	.	gene_id "STRG.25"; transcript_id "STRG.25.1"; cov "24.593220"; FPKM "48205.175781"; TPM "64794.914062";
chr8	StringTie	exon	125176213	125178572	1000	-	.	gene_id "STRG.25"; transcript_id "STRG.25.1"; exon_number "1"; cov "24.593220";
chrX	StringTie	transcript	153161449	153161791	1000	-	.	gene_id "STRG.26"; transcript_id "STRG.26.1"; cov "5.000000"; FPKM "9800.500977"; TPM "13173.329102";
chrX	StringTie	exon	153161449	153161791	1000	-	.	gene_id "STRG.26"; transcript_id "STRG.26.1"; exon_number "1"; cov "5.000000";