# /projectnb/wax-es/routines/BIN/stringtie 001_MS330-LITT33-A3-PCR_reads.sorted.filtered.unspliced.bam -o 001_MS330-LITT33-A3-PCR_reads.NOREF.unspliced.gtf
# StringTie version 3.0.1
chr11	StringTie	transcript	17937891	17938195	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "7.203279"; FPKM "1393.954346"; TPM "1312.588013";
chr11	StringTie	exon	17937891	17938195	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "7.203279";
chr19	StringTie	transcript	23134545	23134820	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "98.724648"; FPKM "19104.863281"; TPM "17989.695312";
chr19	StringTie	exon	23134545	23134820	1000	-	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "98.724648";
chr19	StringTie	transcript	23136736	23137718	1000	-	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "5059.975586"; FPKM "979189.562500"; TPM "922033.312500";
chr19	StringTie	exon	23136736	23137718	1000	-	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "5059.975586";
chr19	StringTie	transcript	23139676	23140067	1000	+	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "155.545914"; FPKM "30100.724609"; TPM "28343.718750";
chr19	StringTie	exon	23139676	23140067	1000	+	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "155.545914";
chr1	StringTie	transcript	145720929	145721269	1000	-	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "16.794724"; FPKM "3250.058594"; TPM "3060.349854";
chr1	StringTie	exon	145720929	145721269	1000	-	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "16.794724";
chr4	StringTie	transcript	79092103	79092644	1000	+	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "5.985240"; FPKM "1158.243652"; TPM "1090.635864";
chr4	StringTie	exon	79092103	79092644	1000	+	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "5.985240";
chr5	StringTie	transcript	27806555	27806787	1000	+	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "7.012876"; FPKM "1357.108276"; TPM "1277.892578";
chr5	StringTie	exon	27806555	27806787	1000	+	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "7.012876";
chr5	StringTie	transcript	102205116	102205451	1000	-	.	gene_id "STRG.8"; transcript_id "STRG.8.1"; cov "73.077377"; FPKM "14141.688477"; TPM "13316.225586";
chr5	StringTie	exon	102205116	102205451	1000	-	.	gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "1"; cov "73.077377";
chr8	StringTie	transcript	66264956	66265469	1000	-	.	gene_id "STRG.9"; transcript_id "STRG.9.1"; cov "4.768483"; FPKM "922.780945"; TPM "868.917297";
chr8	StringTie	exon	66264956	66265469	1000	-	.	gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "1"; cov "4.768483";
chr9	StringTie	transcript	26683360	26683842	1000	+	.	gene_id "STRG.10"; transcript_id "STRG.10.1"; cov "9.320911"; FPKM "1803.751587"; TPM "1698.464844";
chr9	StringTie	exon	26683360	26683842	1000	+	.	gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "1"; cov "9.320911";
chr9	StringTie	transcript	87601652	87601938	1000	+	.	gene_id "STRG.11"; transcript_id "STRG.11.1"; cov "49.435539"; FPKM "9566.599609"; TPM "9008.188477";
chr9	StringTie	exon	87601652	87601938	1000	+	.	gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "1"; cov "49.435539";